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Page 1
Cross-species analysis of enhancer logic using deep learning.
Genome Res. 2020 Dec;30(12):1815-1834. doi: 10.1101/gr.260844.120. Epub 2020 Jul 30.
Genome Res. 2020.
PMID: 32732264
Free PMC article.
Interpretation of allele-specific chromatin accessibility using cell state-aware deep learning.
Atak ZK, Taskiran II, Demeulemeester J, Flerin C, Mauduit D, Minnoye L, Hulselmans G, Christiaens V, Ghanem GE, Wouters J, Aerts S.
Atak ZK, et al. Among authors: ghanem ge.
Genome Res. 2021 Jun;31(6):1082-1096. doi: 10.1101/gr.260851.120. Epub 2021 Apr 8.
Genome Res. 2021.
PMID: 33832990
Free PMC article.
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Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state.
Verfaillie A, Imrichova H, Atak ZK, Dewaele M, Rambow F, Hulselmans G, Christiaens V, Svetlichnyy D, Luciani F, Van den Mooter L, Claerhout S, Fiers M, Journe F, Ghanem GE, Herrmann C, Halder G, Marine JC, Aerts S.
Verfaillie A, et al. Among authors: ghanem ge.
Nat Commun. 2015 Apr 9;6:6683. doi: 10.1038/ncomms7683.
Nat Commun. 2015.
PMID: 25865119
Free PMC article.
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The impact of adjuvant chemotherapy in older breast cancer patients on clinical and biological aging parameters.
Brouwers B, Hatse S, Dal Lago L, Neven P, Vuylsteke P, Dalmasso B, Debrock G, Van Den Bulck H, Smeets A, Bechter O, Bailur JK, Kenis C, Laenen A, Schöffski P, Pawelec G, Journe F, Ghanem GE, Wildiers H.
Brouwers B, et al. Among authors: ghanem ge.
Oncotarget. 2016 May 24;7(21):29977-88. doi: 10.18632/oncotarget.8796.
Oncotarget. 2016.
PMID: 27102154
Free PMC article.
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